SNP Profiles of IMC 2 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	TT	CC	CC	TT	CT	GG	AC	CC	AG	CT	AG	GG	AT	CC
1._IMC_2	_	_	CC	TT	CT	_	AC	CC	AG	CT	_	_	AT	_
2._IMC_2	_	_	CC	TT	CT	_	AC	CC	AG	CT	_	_	AT	_
3._IMC_2	_	_	CC	TT	CT	_	AC	CC	AG	CT	_	_	AT	_
4._IMC_2	_	_	CC	TT	CT	_	AC	CC	AG	CT	_	_	AT	_
5._RUQ_828	_	_	CC	TT	CT	_	AC	CC	AG	CT	_	_	AT	_
6._GC-04-042-3-06	TT	CC	CC	TT	CT	GG	AC	CC	AG	CT	AG	GG	AT	CC
7._GC-04-042-3-06	TT	CC	CC	TT	CT	GG	AC	CC	AG	CT	AG	GG	AT	CC
8._GC-04-042-3-06	TT	CC	CC	TT	CT	GG	AC	CC	AG	CT	AG	GG	AT	CC
9._GC-04-042-3-06	TT	CC	CC	TT	CT	GG	AC	CC	AG	CT	AG	GG	AT	CC
10._IMC_2	_	_	AC	GT	CT	_	AC	_	_	CT	_	_	AA	_
11._GC-04-42-3-6	AA	CC	CC	AA	AG	GG	AC	GG	AG	AG	AG	GG	AT	GG

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AG	AC	CC	GT	CG	AC	CT	CC	TT	GT	GG	TT	AC	CC
1._IMC_2	AG	AC	CC	GT	GG	AC	_	CC	_	GT	_	_	_	CC
2._IMC_2	AG	AC	CC	GT	GG	AC	_	CC	_	GT	_	_	_	CC
3._IMC_2	AG	AC	CC	GT	GG	AC	_	CC	_	GT	_	_	_	CC
4._IMC_2	AG	AC	CC	GT	GG	AC	_	CC	_	GT	_	_	_	CC
5._RUQ_828	AG	AC	CC	GT	GG	AC	_	CC	_	GT	_	_	_	CC
6._GC-04-042-3-06	AG	AC	CC	GT	GG	AC	CT	CC	CC	GT	GG	TT	AC	CC
7._GC-04-042-3-06	AG	AC	CC	GT	GG	AC	CT	CC	CC	GT	GG	TT	AC	CC
8._GC-04-042-3-06	AG	AC	CC	GT	GG	AC	CT	CC	CC	GT	GG	TT	AC	CC
9._GC-04-042-3-06	AG	AC	CC	GT	GG	AC	CT	CC	CC	GT	GG	TT	AC	CC
10._IMC_2	AA	CC	CT	GG	GG	AA	_	CC	_	GG	_	_	_	CC
11._GC-04-42-3-6	_	AC	_	AC	CG	AC	AG	GG	_	AC	GG	AA	AC	GG

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	CC	TT	AA	CC	CC	GG	GG	TT	TT	CT	CC	TT	GG	AG
1._IMC_2	_	TT	AA	_	CC	_	_	_	TT	_	_	TT	GG	AG
2._IMC_2	_	TT	AA	_	CC	_	_	_	TT	_	_	TT	GG	AG
3._IMC_2	_	TT	AA	_	CC	_	_	_	TT	_	_	TT	GG	AG
4._IMC_2	_	TT	AA	_	CC	_	_	_	TT	_	_	TT	GG	AG
5._RUQ_828	_	CT	AA	_	CC	_	_	_	TT	_	_	TT	GG	AG
6._GC-04-042-3-06	CC	TT	AA	CC	CC	GG	GG	TT	TT	TT	CC	TT	GG	AG
7._GC-04-042-3-06	CC	TT	AA	CC	CC	GG	GG	TT	TT	TT	CC	TT	GG	AG
8._GC-04-042-3-06	CC	TT	AA	CC	CC	GG	GG	TT	TT	TT	CC	TT	GG	AG
9._GC-04-042-3-06	CC	TT	AA	CC	CC	GG	GG	TT	TT	TT	CC	TT	GG	AG
10._IMC_2	_	TT	AA	_	CC	_	_	_	GG	_	_	TT	CG	AG
11._GC-04-42-3-6	_	AA	AA	_	GG	CC	GG	_	AA	AG	GG	AA	CC	AG

Input profile: IMC_2 RUQ_828

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

1._IMC_2

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4306 5 > FP

Dapeng Zhang, 2016

2._IMC_2

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4306 4 > FP

Dapeng Zhang, 2016

3._IMC_2

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4306 8

Dapeng Zhang, 2016

4._IMC_2

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4306 1

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

5._IMC_2 RUQ_828

95.8 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

6._IMC_2 GC-04-042-3-06

95.2 %
42 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

7._IMC_2 GC-04-042-3-06

95.2 %
42 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4 > FP4

8._IMC_2 GC-04-042-3-06

95.2 %
42 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5 > FP1

9._IMC_2 GC-04-042-3-06

95.2 %
42 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 8

Notes: 8

10._IMC_2

70.5 %
22 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 6B A41 T8

Dapeng Zhang, 2016

11._IMC_2 GC-04-42-3-6

44.4 %
36 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Field: 4, Block: 3, Rep: 6, Tree: 4

Notes: MCCS_Structure_refs_above_0.9membership

Key to SNP Markers

Key to SNP Markers

1	TcSNP75	2	TcSNP90	3	TcSNP144	4	TcSNP150	5	TcSNP151
6	TcSNP174	7	TcSNP193	8	TcSNP226	9	TcSNP230	10	TcSNP242
11	TcSNP329	12	TcSNP364	13	TcSNP372	14	TcSNP448	15	TcSNP469
16	TcSNP529	17	TcSNP534	18	TcSNP560	19	TcSNP577	20	TcSNP591
21	TcSNP602	22	TcSNP619	23	TcSNP702	24	TcSNP723	25	TcSNP731
26	TcSNP799	27	TcSNP823	28	TcSNP872	29	TcSNP878	30	TcSNP891
31	TcSNP998	32	TcSNP999	33	TcSNP1060	34	TcSNP1063	35	TcSNP1111
36	TcSNP1126	37	TcSNP1253	38	TcSNP1309	39	TcSNP1439	40	TcSNP1442
41	TcSNP1458	42	TcSNP1484